Publications

The Bioinformatics Core provides support to researchers across the Perelman School of Medicine. See below for a list of selected publications and their citation scores. A full bibliography can be found here.

Dimensions.ai citation count

Altmetric score

Zhen Lu, et al. Induction of the activating transcription factor-4 in the intratumoral CD8+ T cells sustains their viability and anti-tumor activities, 2022, Cancer Immunology, Immunotherapy

Nora Yucel, et al. Cardiac endothelial cells maintain open chromatin and expression of cardiomyocyte myofibrillar genes. eLife, 2021.
Parisha P.Shah, et al. Pathogenic LMNA variants disrupt cardiac lamina-chromatin interactions and de-repress alternative fate genes. Cell Stem Cell, 2021.
Gerald P. L, et al. Immunological ignorance is an enabling feature of the oligo-clonal T cell response to melanoma neoantigens. PNAS, 2019.

Tameire F, et al. ATF4 couples MYC-dependent translational activity to bioenergetic demands during tumour progression. Nat Cell Biol, 2019.

Sen P, et al. Histone Acetyltransferase p300 Induces De Novo Super-Enhancers to Drive Cellular Senescence. Molecular cell, 2019.

Del Alcazar D, et al. Mapping the Lineage Relationship between CXCR5+ and CXCR5- CD4+ T Cells in HIV-Infected Human Lymph Nodes. Cell Rep, 2019.

Trang T LE, et al. Scaling tree-based automated machine learning to biomedical big data with a dataset selector. Bioinformatics, 2019.

A Bansal, et al. In utero bisphenol A exposure is linked with sex specific changes in the transcriptome and methylome of human amniocytes. JCEM, 2019.

See K, et al. Lineage-specific reorganization of nuclear peripheral heterochromatin and H3K9me2 domains. Development, 2019.

Nishita Shastri et al. Genome-wide identification of structure-forming repeats as principal sites of fork collapse upon ATR inhibition. Mol Cell, 2018.

Kridsada K, et al. Roof Plate-Derived Radial Glial-like Cells Support Developmental Growth of Rapidly Adapting Mechanoreceptor Ascending Axons. Cell Rep, 2018.

Causey JL, et al. Dysregulation of the epigenetic landscape of normal aging in Alzheimer’s disease. Nat Neurosci, 2018.

Wang T, et al. The NIEHS TaRGET II Consortium and environmental epigenomics. Nat Biotechnol, 2018.

Lin-Shiao E, et al. KMT2D regulates p63 target enhancers to coordinate epithelial homeostasis. Genes Dev, 2018.

Dou Z, et al. Cytoplasmic chromatin triggers inflammation in senescence and cancer. Nature, 2017.

Pascual-Garcia P, et al. Metazoan Nuclear Pores Provide a Scaffold for Poised Genes and Mediate Induced Enhancer-Promoter Contacts. Mol Cell, 2017.

Randal Olson, et al. A System for Accessible Artificial Intelligence. arXiv preprint, 2017.

Moshe Sipper, et al. From MEGATON to RASCAL: Surfing the Parameter Space of Evolutionary Algorithms. arXiv preprint, 2017.

Ackermann A, et al. Integration of ATAC-seq and RNA-seq identifies human alpha cell and beta cell signature genes. Molecular metabolism, 2016.