Publications

My Bibliography 

Selected Publications

  • Nishita Shastri etc. Genome-wide identification of structure-forming repeats as principal sites of fork collapse upon ATR inhibition. Molecular Cell. (Accepted)
  • Kridsada K, Niu J, Haldipur P, Wang Z, Ding L, Li JJ, Lindgren AG, Herrera E, Thomas GM, Chizhikov VV, Millen KJ, Luo W. Roof Plate-Derived Radial Glial-like Cells Support Developmental Growth of Rapidly Adapting Mechanoreceptor Ascending Axons. Cell Rep. 2018 Jun 5;23(10):2928-2941.
  • Causey JL, Ashby C, Walker K, Wang ZP, Yang M, Guan Y, Moore JH, Huang X. DNAp: A Pipeline for DNA-seq Data Analysis. Sci Rep. 2018 May 1;8(1):6793.
  • Nativio R, Donahue G, Berson A, Lan Y, Amlie-Wolf A, Tuzer F, Toledo JB, Gosai SJ, Gregory BD, Torres C, Trojanowski JQ, Wang LS, Johnson FB, Bonini NM, Berger SL. Dysregulation of the epigenetic landscape of normal aging in Alzheimer’s disease. Nat Neurosci. 2018 Apr;21(4):497-505.
  • Wang T, Pehrsson EC, Purushotham D, Li D, Zhuo X, Zhang B, Lawson HA, Province MA, Krapp C, Lan Y, Coarfa C, Katz TA, Tang WY, Wang Z, Biswal S, Rajagopalan S, Colacino JA, Tsai ZT, Sartor MA, Neier K, Dolinoy DC, Pinto J, Hamanaka RB, Mutlu GM, Patisaul HB, Aylor DL, Crawford GE, Wiltshire T, Chadwick LH, Duncan CG, Garton AE, McAllister KA; TaRGET II Consortium., Bartolomei MS, Walker CL, Tyson FL. The NIEHS TaRGET II Consortium and environmental epigenomics. Nat Biotechnol. 2018 Mar 6;36(3):225-227.
  • Lin-Shiao E, Lan Y, Coradin M, Anderson A, Donahue G, Simpson CL, Sen P, Saffie R, Busino L, Garcia BA, Berger SL, Capell BC. KMT2D regulates p63 target enhancers to coordinate epithelial homeostasis. Genes Dev. 2018 Jan 15;32(2):181-193.
  • Dou Z, Ghosh K, Vizioli MG, Zhu J, Sen P, Wangensteen KJ, Simithy J, Lan Y, Lin Y, Zhou Z, Capell BC, Xu C, Xu M, Kieckhaefer JE, Jiang T, Shoshkes-Carmel M, Tanim KMAA, Barber GN, Seykora JT, Millar SE, Kaestner KH, Garcia BA, Adams PD, Berger SL. Cytoplasmic chromatin triggers inflammation in senescence and cancer. Nature. 2017 Oct 19;550(7676):402-406.
  • Pascual-Garcia P, Debo B, Aleman JR, Talamas JA, Lan Y, Nguyen NH, Won KJ, Capelson M. “Metazoan Nuclear Pores Provide a Scaffold for Poised Genes and Mediate Induced Enhancer-Promoter Contacts”. Mol Cell. 2017 Apr 6;66(1):63-76.
  • Olson, Randal S and Sipper, Moshe and La Cava, William and Tartarone, Sharon and Vitale, Steven and Fu, Weixuan and Holmes, John H and Moore, Jason H. “A System for Accessible Artificial Intelligence”. arXiv preprint arXiv:1705.00594, 2017.
  • Sipper, Moshe and Fu, Weixuan and Ahuja, Karuna and Moore, Jason H. “From MEGATON to RASCAL: Surfing the Parameter Space of Evolutionary Algorithms”. arXiv preprint arXiv:1706.04119, 2017.
  • Ackermann A, Wang Z, Schug J, Naji A, Kaestner K. “Integration of ATAC-seq and RNA-seq identifies human alpha cell and beta cell signature genes.” Molecular metabolism, 2016.