Selected Publications

  • Nora Yucel, et al. Cardiac endothelial cells maintain open chromatin and expression of cardiomyocyte myofibrillar genes. eLife, 2021.
  • Parisha P.Shah, et al. Pathogenic LMNA variants disrupt cardiac lamina-chromatin interactions and de-repress alternative fate genes. Cell Stem Cell, 2021.
  • Gerald P. L, et al. Immunological ignorance is an enabling feature of the oligo-clonal T cell response to melanoma neoantigens. PNAS, 2019.
  • Tameire F, et al. ATF4 couples MYC-dependent translational activity to bioenergetic demands during tumour progression. Nat Cell Biol, 2019.
  • Sen P, et al. Histone Acetyltransferase p300 Induces De Novo Super-Enhancers to Drive Cellular Senescence. Molecular cell, 2019.
  • Del Alcazar D, et al. Mapping the Lineage Relationship between CXCR5+ and CXCR5- CD4+ T Cells in HIV-Infected Human Lymph Nodes. Cell Rep, 2019.
  • Trang T LE, et al. Scaling tree-based automated machine learning to biomedical big data with a dataset selector. Bioinformatics, 2019.
  • A Bansal, et al. In utero bisphenol A exposure is linked with sex specific changes in the transcriptome and methylome of human amniocytes. JCEM, 2019.
  • See K, et al. Lineage-specific reorganization of nuclear peripheral heterochromatin and H3K9me2 domains. Development, 2019.
  • Nishita Shastri et al. Genome-wide identification of structure-forming repeats as principal sites of fork collapse upon ATR inhibition. Mol Cell, 2018.
  • Kridsada K, et al. Roof Plate-Derived Radial Glial-like Cells Support Developmental Growth of Rapidly Adapting Mechanoreceptor Ascending Axons. Cell Rep, 2018.
  • Causey JL, et al. Dysregulation of the epigenetic landscape of normal aging in Alzheimer’s disease. Nat Neurosci, 2018.
  • Wang T, et al. The NIEHS TaRGET II Consortium and environmental epigenomics. Nat Biotechnol, 2018.
  • Lin-Shiao E, et al. KMT2D regulates p63 target enhancers to coordinate epithelial homeostasis. Genes Dev, 2018.
  • Dou Z, et al. Cytoplasmic chromatin triggers inflammation in senescence and cancer. Nature, 2017.
  • Pascual-Garcia P, et al. Metazoan Nuclear Pores Provide a Scaffold for Poised Genes and Mediate Induced Enhancer-Promoter Contacts. Mol Cell, 2017.
  • Randal Olson, et al. A System for Accessible Artificial Intelligence. arXiv preprint, 2017.
  • Moshe Sipper, et al. From MEGATON to RASCAL: Surfing the Parameter Space of Evolutionary Algorithms. arXiv preprint, 2017.
  • Ackermann A, et al. Integration of ATAC-seq and RNA-seq identifies human alpha cell and beta cell signature genes. Molecular metabolism, 2016.